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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002722
species: Theobroma cacao
miRNA family: MIRf325
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GACCATTTTCGTTGCTCTCTT

miRNA*
GAAGCACTGGTATTGGCGT

mismatches: 4
bulges: 2

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pre-miRNA
ATCGCCTTGATGACCATTTTCGTTGCTCTCTTCCTCCCCGAAACAAAAGGAATTCCTCTCGACTCCATGAATTTAGTTTGGGAGAAGCACTGGTATTGGC
GT
CGGTTTGT


dot-bracket secondary structure
...(((..((((.(((...(((.((((.((((((..............(((.((......)).))).............)))))))))).)))...))))
))
))))....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q93Y91|STP5_ARATH: 0.00000000005

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





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