ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGGCTGGCTCGATG mismatches: 3 bulges: 2 |
pre-miRNA
TTTGTCTTTGAGAGGAATGTTGGCTGGCTCGATGCGGGGGGCTTTGAGAGTGATCAAAGTGAAAGGTATCGGACCAGGCTTCATTCCCCTCAAACATTT
dot-bracket secondary structure
...((.((((((.((((((..((((((.(((((((.....(((((((......))))))).....))))))).))).))).)))))).)))))).))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTGTCTTTGAGAGGAATGTTGGCTGGCTCGATGCGGGGGGCTTTGAGAGTGATCAAAGTGAAAGGTATCGGACCAGGCTTCATTCCCCTCAAACATTT
dot-bracket secondary structure
...((.((((((.((((((..((((((.(((((((.....(((((((......))))))).....))))))).))).))).)))))).)))))).))..
SIMILARITIES| miRBase ptc-MIR166f: 0.000000001 PMRD ptc-miR166f: 0.000000001 microPC miR166: 0.00002 | UniProt no hits RFAM mir-166: 0.000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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