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Species belonging to selected taxon:
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Theobroma cacao
ABOUT THIS RECORD
ID:
MNEST002730
species:
Theobroma cacao
miRNA family:
MIR166
source:
miRNEST
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC
miRNA*
GGAATGTTGGCTGGCTCGATG
mismatches:
3
bulges:
2
View larger
pre-miRNA
TTTGTCTTTGAGA
GGAATGTTGGCTGGCTCGATG
CGGGGGGCTTTGAGAGTGATCAAAGTGAAAGGTA
TCGGACCAGGCTTCATTCCCC
TCAAACATTT
dot-bracket secondary structure
...((.((((((.
((((((..((((((.((((((
(.....(((((((......))))))).....)))
)))).))).))).)))))).)
))))).))..
SIMILARITIES
miRBase
ptc-MIR166f
:
0.000000001
PMRD
ptc-miR166f
:
0.000000001
microPC
miR166
:
0.00002
UniProt
no hits
RFAM
mir-166: 0.000001
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record