ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGCTCGAGG miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 5 bulges: 0 |
pre-miRNA
CGGGGGAGGGGAATGTTGTCTGGCTCGAGGCCACCAACTAGATCTATAATTCTATCTCAATTGATCAAAATTTTCTGTGGATTTTATTTTTTCGACTAAA
GTTGAGATCATGATCATTGATCATAAGTTAGTGACGTCGGACCAGGCTTCATTCCCCCCAATT
dot-bracket secondary structure
....((.((((((((..((((((.((((...(((.((((.((((......((.(((((((((..(((((((..((....))....)))))...))....)
))))))))...)).....))))...)))).)))...)))).))))))..))))))))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGGGGGAGGGGAATGTTGTCTGGCTCGAGGCCACCAACTAGATCTATAATTCTATCTCAATTGATCAAAATTTTCTGTGGATTTTATTTTTTCGACTAAA
GTTGAGATCATGATCATTGATCATAAGTTAGTGACGTCGGACCAGGCTTCATTCCCCCCAATT
dot-bracket secondary structure
....((.((((((((..((((((.((((...(((.((((.((((......((.(((((((((..(((((((..((....))....)))))...))....)
))))))))...)).....))))...)))).)))...)))).))))))..))))))))))....
SIMILARITIES| miRBase ctr-MIR166: 0.000000000000002 PMRD vvi-miR166e: 0.000000000000009 microPC miR166: 0.0000000000001 | UniProt no hits RFAM mir-166: 0.0000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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