ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGCTCGAGG miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 5 bulges: 0 |
pre-miRNA
TCGGGGGAGGGGAATGTTGTCTGGCTCGAGGCCACCAACTAGATCTATAATTCTATCTCAATTGATCAAAATTTTCTGTGGATTTTATTTTTTCGACTAAA
GTTGAGATCATGATCATTGATCATAAGTTAGTGACGTCGGACCAGGCTTCATTCCCCCCAATT
dot-bracket secondary structure
)....((.((((((((..((((((.((((...(((.((((.((((......((.(((((((((..(((((((..((....))....)))))...))....)
))))))))...)).....))))...)))).)))...)))).))))))..))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCGGGGGAGGGGAATGTTGTCTGGCTCGAGGCCACCAACTAGATCTATAATTCTATCTCAATTGATCAAAATTTTCTGTGGATTTTATTTTTTCGACTAAA
GTTGAGATCATGATCATTGATCATAAGTTAGTGACGTCGGACCAGGCTTCATTCCCCCCAATT
dot-bracket secondary structure
)....((.((((((((..((((((.((((...(((.((((.((((......((.(((((((((..(((((((..((....))....)))))...))....)
))))))))...)).....))))...)))).)))...)))).))))))..))))))))))....
SIMILARITIES| miRBase ctr-MIR166: 2.0E-15 PMRD vvi-miR166e: 9.0E-15 microPC miR166: 1.0E-13 | UniProt no hits RFAM 6mir-166: 2.0E-13 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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