miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Theobroma cacao



ABOUT THIS RECORD

ID: MNEST002733
species: Theobroma cacao
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAATGTTGTCTGGCTCGAGG

miRNA*
TCGGACCAGGCTTCATTCCCC

mismatches: 5
bulges: 0

View larger
pre-miRNA
CGGGGGAGGGGAATGTTGTCTGGCTCGAGGCCACCAACTAGATCTATAATTCTATCTCAATTGATCAAAATTTTCTGTGGATTTTATTTTTTCGACTAAA
GTTGAGATCATGATCATTGATCATAAGTTAGTGACGTCGGACCAGGCTTCATTCCCCCCAATT


dot-bracket secondary structure
....((.((((((((..((((((.((((...(((.((((.((((......((.(((((((((..(((((((..((....))....)))))...))....)
))))))))...)).....))))...)))).)))...)))).))))))..))))))))))....



SIMILARITIES
miRBase ctr-MIR166: 0.000000000000002

PMRD vvi-miR166e: 0.000000000000009

microPC miR166: 0.0000000000001
UniProt no hits

RFAM mir-166: 0.0000000000002
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;