ABOUT THIS RECORDspecies: Triticum monococcum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Triticum monococcum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTTCCTAAATA miRNA* TTTAGAAATGGAGGAAGTAGT mismatches: 2 bulges: 0 |
pre-miRNA
GACATCACCAGATAGAATAGCCAGCATGGAACATTCCATTATACTCCCTCCGTTCCTAAATATAAGCCTTTTTAGATATTCCAATATGGACTATATACGG
AGCAAAATGAGTGAATCTACACTCCAAAATATGTCTATATACATCCGCATGTAGTCCGTATTCAAATCTTTAAAAGGGCTTATATTTAGAAATGGAGGAA
GTAGTACCCATACATGAGTCCCAGGAGATTGAGAAACATTTCC
dot-bracket secondary structure
..........(((.((((..(((...)))...)))).))).((((.((((((((.(((((((((((((((((((((.(((..((((((((((((((.(((
((((....(((((......))))).......))).........)))).))))))))))))))..))).))))))))))))))))))))).)))))))).)
)))..........(((..((.(((....))).))..)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GACATCACCAGATAGAATAGCCAGCATGGAACATTCCATTATACTCCCTCCGTTCCTAAATATAAGCCTTTTTAGATATTCCAATATGGACTATATACGG
AGCAAAATGAGTGAATCTACACTCCAAAATATGTCTATATACATCCGCATGTAGTCCGTATTCAAATCTTTAAAAGGGCTTATATTTAGAAATGGAGGAA
GTAGTACCCATACATGAGTCCCAGGAGATTGAGAAACATTTCC
dot-bracket secondary structure
..........(((.((((..(((...)))...)))).))).((((.((((((((.(((((((((((((((((((((.(((..((((((((((((((.(((
((((....(((((......))))).......))).........)))).))))))))))))))..))).))))))))))))))))))))).)))))))).)
)))..........(((..((.(((....))).))..)))....
SIMILARITIES| miRBase tae-MIR1122: 1e-33 PMRD tae-miR1122: 1e-33 microPC miR1436: 2e-19 | UniProt no hits RFAM MIR1122: 4e-49 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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