ABOUT THIS RECORDspecies: Triticum turgidum subsp. durum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Triticum turgidum subsp. durum Triticum turgidum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCCCATAATG miRNA* TTATGGGACAGAGGGCGTAGT mismatches: 2 bulges: 0 |
pre-miRNA
ATATAATACTCCCTCCGTCCCATAATGTAAGACATTTTTTGACATTACACTAGAGTCAAAAAACGTCTTACGTTATGGGACAGAGGGCGTAGTTAA
dot-bracket secondary structure
......(((.(((((.(((((((((((((((((.(((((((((.(((...))).))))))))).))))))))))))))))).))))).))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATATAATACTCCCTCCGTCCCATAATGTAAGACATTTTTTGACATTACACTAGAGTCAAAAAACGTCTTACGTTATGGGACAGAGGGCGTAGTTAA
dot-bracket secondary structure
......(((.(((((.(((((((((((((((((.(((((((((.(((...))).))))))))).))))))))))))))))).))))).))).....
SIMILARITIES| miRBase tae-MIR1130: 0.000005 PMRD tae-miR1130: 0.000005 microPC miR1130: 4e-37 | UniProt no hits RFAM MIR1122: 2e-20 | most similar mature miRNAs |
Identical with: miR1130 from microPC (MNEST046150) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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