ABOUT THIS RECORDspecies: Zingiber officinale
miRNA family: miR1172.1
source: miRNEST
Taxonomy by NCBI:
Zingiber officinale Zingiber Zingiberaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCTTGCAGCAGCAACGGGC miRNA* TCCTTGTACTCGTACGCCACC mismatches: 3 bulges: 2 |
pre-miRNA
ATGAGGACGGGGATCTTCTTGTGGACGGGGTTGGCTTGCAGCAGCAACGGGCTCTTGTTGTCCAAGTCCTGCTCCTTGTACTCGTACGCCACCCCTTTCT
CCGCCAGCGCGATCCGGCACC
dot-bracket secondary structure
..........(((((..((.(((((.((((.((((.(((((..((((.((((.((((.....))))....)))).)))).)).))).)))).))))...)
)))).))...)))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATGAGGACGGGGATCTTCTTGTGGACGGGGTTGGCTTGCAGCAGCAACGGGCTCTTGTTGTCCAAGTCCTGCTCCTTGTACTCGTACGCCACCCCTTTCT
CCGCCAGCGCGATCCGGCACC
dot-bracket secondary structure
..........(((((..((.(((((.((((.((((.(((((..((((.((((.((((.....))))....)))).)))).)).))).)))).))))...)
)))).))...)))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q03666|GSTX4_TOBAC: 0.00000000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
