ABOUT THIS RECORDspecies: Bruguiera gymnorhiza
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACT miRNA* CTCAAGAAAGCTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
GTCATGCTATTCCACAGCTTTCTTGAACTTTCTTGAACTGCTTTTTATAATTTTTGTATATAGCACCATACATGGAAGCTCAAGAAAGCTGTGGGAAAAC
ATGG
dot-bracket secondary structure
.(((((...(((((((((((((((((.(((((.((...((((...((((.......)))).)))).....)).))))).)))))))))))))))))...)
))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTCATGCTATTCCACAGCTTTCTTGAACTTTCTTGAACTGCTTTTTATAATTTTTGTATATAGCACCATACATGGAAGCTCAAGAAAGCTGTGGGAAAAC
ATGG
dot-bracket secondary structure
.(((((...(((((((((((((((((.(((((.((...((((...((((.......)))).)))).....)).))))).)))))))))))))))))...)
))))
SIMILARITIES| miRBase tcc-MIR396c: 0.00000000008 PMRD ath-miR396b: 0.00000000008 microPC miR396: 3e-44 | UniProt no hits RFAM MIR396: 0.000000001 | most similar mature miRNAs |
Identical with: miR396 from microPC (MNEST046563) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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