ABOUT THIS RECORDspecies: Bruguiera gymnorhiza
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTGTCATCA mismatches: 1 bulges: 1 |
pre-miRNA
GGGATTGGGGACTTGGGGAGAGGGAGAGGAGGCACTGCTGATGCTGTTTGACAGAAGATAGAGAGCACAGATGATGATGTGCAATTTTTGGATTCTGCAT
CTCACTCCTTTGTGCTCTCTATGCTTCTGTCATCACCTTTAGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTAGG
dot-bracket secondary structure
((((..(((((....(((((((((((((((((....(((((...((..(((((((((((((((((((((((.(((((.(((((............)))))
.))).)).)))))))))))))).))))))))).))...)))))...)))))))))))))))))))))).))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGATTGGGGACTTGGGGAGAGGGAGAGGAGGCACTGCTGATGCTGTTTGACAGAAGATAGAGAGCACAGATGATGATGTGCAATTTTTGGATTCTGCAT
CTCACTCCTTTGTGCTCTCTATGCTTCTGTCATCACCTTTAGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTAGG
dot-bracket secondary structure
((((..(((((....(((((((((((((((((....(((((...((..(((((((((((((((((((((((.(((((.(((((............)))))
.))).)).)))))))))))))).))))))))).))...)))))...)))))))))))))))))))))).))))......
SIMILARITIES| miRBase rco-MIR156h: 8e-31 PMRD ptc-miR156j: 8e-28 microPC miR157: 9e-43 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045004) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
