ABOUT THIS RECORDspecies: Cajanus cajan
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Cajanus cajan Cajanus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGACAGAAGAGAGAGAGCAA miRNA* GAATTCTTTCCCTTTCATTC mismatches: 4 bulges: 1 |
pre-miRNA
TTGACAAATACATCCCCAGGATGACAGAAGAGAGAGAGCAAGTTGAGATGAAAGCATATCTCATCTTATCTGGAAATGTTTGTAAGGTGCATTTTCTTGG
GTTGAATTCTTTCCCTTTCATTCCGGATACGTTACAACAA
dot-bracket secondary structure
...........((((...((((((.((..(((((((..(((..(((((((......))))))).((((...((((((((.(....)..)))))))).)))
))))..))))))).)).)))))).))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTGACAAATACATCCCCAGGATGACAGAAGAGAGAGAGCAAGTTGAGATGAAAGCATATCTCATCTTATCTGGAAATGTTTGTAAGGTGCATTTTCTTGG
GTTGAATTCTTTCCCTTTCATTCCGGATACGTTACAACAA
dot-bracket secondary structure
...........((((...((((((.((..(((((((..(((..(((((((......))))))).((((...((((((((.(....)..)))))))).)))
))))..))))))).)).)))))).))))............
SIMILARITIES| miRBase zma-MIR156j: 0.0001 PMRD ath-miR156o: 0.000007 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
