ABOUT THIS RECORDspecies: Carica papaya
miRNA family: MIRf893
source: miRNEST
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCTGATGGTGATCTTTCAA miRNA* GAAAGATTATCAGAGAACAG mismatches: 3 bulges: 1 |
pre-miRNA
TCATCCGATGCTGAAAGATTATCAGAGAACAGTGATAAGCACTCCGAAGGTGGCTCCCACCAGTCACTGGATGAATCCAGATATCATAAAGAACTTCTTC
CACAGTCTAAGTTTGCTGGAAGTAGTGCAGCTCAGAATTTAACAGAAGATATTGAACTCCTAGGTCTGAGGGATGCAGACTCTGAGGAGAGATTAAGCGA
CATTTCTGATGGTGATCTTTCAATGGGAACGG
dot-bracket secondary structure
...(((.((..(((((((((((((.((((.((((.....))))..((.(((((...)))))..)).(((((....)))))...((.....))(((.((((
(((((.......))).)))))).)))(..(((...(((((..(((......)))..(((((.((((((.......))))))...)))))))))).)))..
)..))))..))))))))))))))).)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCATCCGATGCTGAAAGATTATCAGAGAACAGTGATAAGCACTCCGAAGGTGGCTCCCACCAGTCACTGGATGAATCCAGATATCATAAAGAACTTCTTC
CACAGTCTAAGTTTGCTGGAAGTAGTGCAGCTCAGAATTTAACAGAAGATATTGAACTCCTAGGTCTGAGGGATGCAGACTCTGAGGAGAGATTAAGCGA
CATTTCTGATGGTGATCTTTCAATGGGAACGG
dot-bracket secondary structure
...(((.((..(((((((((((((.((((.((((.....))))..((.(((((...)))))..)).(((((....)))))...((.....))(((.((((
(((((.......))).)))))).)))(..(((...(((((..(((......)))..(((((.((((((.......))))))...)))))))))).)))..
)..))))..))))))))))))))).)))....
SIMILARITIES| miRBase no hits PMRD ptc-miRf10575-akr: 0.000000003 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
