miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002867
species: Carica papaya
miRNA family: MIRf893
source: miRNEST

Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTCTGATGGTGATCTTTCAA

miRNA*
 GAAAGATTATCAGAGAACAG

mismatches: 3
bulges: 1
View larger
pre-miRNA
 TCATCCGATGCTGAAAGATTATCAGAGAACAGTGATAAGCACTCCGAAGGTGGCTCCCACCAGTCACTGGATGAATCCAGATATCATAAAGAACTTCTTC
CACAGTCTAAGTTTGCTGGAAGTAGTGCAGCTCAGAATTTAACAGAAGATATTGAACTCCTAGGTCTGAGGGATGCAGACTCTGAGGAGAGATTAAGCGA
CATTTCTGATGGTGATCTTTCAATGGGAACGG

dot-bracket secondary structure
...(((.((..(((((((((((((.((((.((((.....))))..((.(((((...)))))..)).(((((....)))))...((.....))(((.((((
(((((.......))).)))))).)))(..(((...(((((..(((......)))..(((((.((((((.......))))))...)))))))))).)))..
)..))))..))))))))))))))).)))....


SIMILARITIES
miRBase no hits

PMRD ptc-miRf10575-akr: 0.000000003

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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