ABOUT THIS RECORDspecies: Carica papaya
miRNA family: MIRf1215
source: miRNEST
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGGTCATTTTGTTTATAGA miRNA* TGTGAACATCTTGACCAAGGGGA mismatches: 4 bulges: 2 |
pre-miRNA
GCATTCAAATCCCCGGTCATTTTGTTTATAGAACGCGGTTCTCTAGGACATCNNNAAAAAGCTTTCTTCTGCCTCAATGCAGAACAGATGTTTTATATGT
TTCTGACCCTTGTGAACATCTTGACCAAGGGGAAGAAGGTG
dot-bracket secondary structure
((.(((...((((((((((...(((((((((.....((((.....((((((......(((((..((((((((......)))))..))).)))))..))))
))..)))).)))))))))...)))))..))))).))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
GCATTCAAATCCCCGGTCATTTTGTTTATAGAACGCGGTTCTCTAGGACATCNNNAAAAAGCTTTCTTCTGCCTCAATGCAGAACAGATGTTTTATATGT
TTCTGACCCTTGTGAACATCTTGACCAAGGGGAAGAAGGTG
dot-bracket secondary structure
((.(((...((((((((((...(((((((((.....((((.....((((((......(((((..((((((((......)))))..))).)))))..))))
))..)))).)))))))))...)))))..))))).))).)).
SIMILARITIES| miRBase no hits PMRD ptc-miRf11908-akr: 3e-23 microPC no hits | UniProt sp|Q9LF38|EDL1_ARATH: 2e-17 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
