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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Limnanthes alba
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Tropaeolum majus
,
Carica papaya
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST002869
species:
Carica papaya
miRNA family:
MIRf1215
source:
miRNEST
Taxonomy by NCBI:
Carica papaya
Carica
Caricaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCCGGTCATTTTGTTTATAGA
miRNA*
TGTGAACATCTTGACCAAGGGGA
mismatches:
4
bulges:
2
View larger
pre-miRNA
GCATTCAAATC
CCCGGTCATTTTGTTTATAGA
ACGCGGTTCTCTAGGACATCNNNAAAAAGCTTTCTTCTGCCTCAATGCAGAACAGATGTTTTATATGT
TTCTGACCCT
TGTGAACATCTTGACCAAGGGGA
AGAAGGTG
dot-bracket secondary structure
((.(((...((
((((((((...(((((((((.
....((((.....((((((......(((((..((((((((......)))))..))).)))))..))))
))..)))).)
))))))))...)))))..)))))
.))).)).
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf11908-akr
:
3e-23
microPC
no hits
UniProt
sp|Q9LF38|EDL1_ARATH: 2e-17
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record