ABOUT THIS RECORDspecies: Carica papaya
miRNA family: MIR535
source: miRNEST
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAACGAGAGAGAGCACGC miRNA* GTGCTCTATGTCGTTGTCATA mismatches: 3 bulges: 0 |
pre-miRNA
TGGGATTTGGGTGACAACGAGAGAGAGCACGCTTGTTATCACTCATCCGAGGTATATGATTGTGTACGGGCGTGCTCTATGTCGTTGTCATACAATCTGT
dot-bracket secondary structure
..(((((...((((((((((...(((((((((((((...(((((((.........))))..))).)))))))))))))...))))))))))..)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGGGATTTGGGTGACAACGAGAGAGAGCACGCTTGTTATCACTCATCCGAGGTATATGATTGTGTACGGGCGTGCTCTATGTCGTTGTCATACAATCTGT
dot-bracket secondary structure
..(((((...((((((((((...(((((((((((((...(((((((.........))))..))).)))))))))))))...))))))))))..)))))..
SIMILARITIES| miRBase vvi-MIR535c: 0.000000000000001 PMRD vvi-miR535e: 0.000000000000001 microPC miR535: 2e-39 | UniProt no hits RFAM MIR535: 4e-50 | most similar mature miRNAs |
Identical with: miR535 from microPC (MNEST045543) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
