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ABOUT THIS RECORD

ID: MNEST002878
species: Carica papaya
miRNA family: MIR535
source: miRNEST

Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAACGAGAGAGAGCACGC

miRNA*
 GTGCTCTATGTCGTTGTCATA

mismatches: 3
bulges: 0
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pre-miRNA
 TTGGGATTTGGGTGACAACGAGAGAGAGCACGCTTGTTATCACTCATCCGAGGTATATGATTGTGTACGGGCGTGCTCTATGTCGTTGTCATACAATCTGT


dot-bracket secondary structure
)..(((((...((((((((((...(((((((((((((...(((((((.........))))..))).)))))))))))))...))))))))))..)))))..



SIMILARITIES
miRBase vvi-MIR535c: 1.0E-15

PMRD vvi-miR535e: 1.0E-15

microPC miR535: 2.0E-39		UniProt no hits

RFAM 5MIR535: 4.0E-50		most similar mature miRNAs

Identical with: miR535 from microPC (MNEST045543)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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