miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002878
species: Carica papaya
miRNA family: MIR535
source: miRNEST

Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAACGAGAGAGAGCACGC

miRNA*
 GTGCTCTATGTCGTTGTCATA

mismatches: 3
bulges: 0
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pre-miRNA
 TGGGATTTGGGTGACAACGAGAGAGAGCACGCTTGTTATCACTCATCCGAGGTATATGATTGTGTACGGGCGTGCTCTATGTCGTTGTCATACAATCTGT


dot-bracket secondary structure
..(((((...((((((((((...(((((((((((((...(((((((.........))))..))).)))))))))))))...))))))))))..)))))..



SIMILARITIES
miRBase vvi-MIR535c: 0.000000000000001

PMRD vvi-miR535e: 0.000000000000001

microPC miR535: 2e-39		UniProt no hits

RFAM MIR535: 4e-50		most similar mature miRNAs

Identical with: miR535 from microPC (MNEST045543)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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