ABOUT THIS RECORDspecies: Carthamus tinctorius
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGTCAGCGGTTCATCGATC mismatches: 4 bulges: 0 |
pre-miRNA
TGTGCGTTTGGTGGAGTTCATTGGAGTCAGCGGTTCATCGATCAGTTCCTCTAACAAACATACGAACAAGGGGGAGAAAGAGAGAGGAATCGATCGATAA
ACCTCTGCATCCAGTGTCCACCCCTGCCGTGCC
dot-bracket secondary structure
.(((((...((((((...(((((((..(((.((((.(((((((.((((((((..............................)))))))).))))))).)
))).)))..))))))))))))).....))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTGCGTTTGGTGGAGTTCATTGGAGTCAGCGGTTCATCGATCAGTTCCTCTAACAAACATACGAACAAGGGGGAGAAAGAGAGAGGAATCGATCGATAA
ACCTCTGCATCCAGTGTCCACCCCTGCCGTGCC
dot-bracket secondary structure
.(((((...((((((...(((((((..(((.((((.(((((((.((((((((..............................)))))))).))))))).)
))).)))..))))))))))))).....))))).
SIMILARITIES| miRBase osa-MIR162a: 0.0000000004 PMRD osa-miR162a: 0.0000000004 microPC miR162: 0.000000000002 | UniProt no hits RFAM MIR162_2: 0.000000008 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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