miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Carthamus tinctorius



ABOUT THIS RECORD

ID: MNEST002897
species: Carthamus tinctorius
miRNA family: MIR162
source: miRNEST

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG

miRNA*
GGAGTCAGCGGTTCATCGATC

mismatches: 4
bulges: 0

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pre-miRNA
TGTGCGTTTGGTGGAGTTCATTGGAGTCAGCGGTTCATCGATCAGTTCCTCTAACAAACATACGAACAAGGGGGAGAAAGAGAGAGGAATCGATCGATAA
ACCTCTGCATCCAG
TGTCCACCCCTGCCGTGCC


dot-bracket secondary structure
.(((((...((((((...(((((((..(((.((((.(((((((.((((((((..............................)))))))).))))))).)
))).)))..)))))
)))))))).....))))).



SIMILARITIES
miRBase osa-MIR162a: 0.0000000004

PMRD osa-miR162a: 0.0000000004

microPC miR162: 0.000000000002
UniProt no hits

RFAM MIR162_2: 0.000000008
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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