ABOUT THIS RECORDspecies: Carthamus tinctorius
miRNA family: MIRf1351
source: miRNEST
Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGACAGAAGAGAGTGAGCA miRNA* CTCACTTCTCTTGCTGTCAGCTA mismatches: 0 bulges: 2 |
pre-miRNA
AGAAAGAAAGCTGACAGAAGAGAGTGAGCATATGCAAAGCAATTGTATAGAAAAACTATACGTTTGTTGGAATTATGCGTGTGCTCACTTCTCTTGCTGT
CAGCTACCCTCA
dot-bracket secondary structure
........((((((((((((((((((((((((((((.(((((.(((((((.....))))))).))))).......))))))))))))).)))))).))))
))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAAAGAAAGCTGACAGAAGAGAGTGAGCATATGCAAAGCAATTGTATAGAAAAACTATACGTTTGTTGGAATTATGCGTGTGCTCACTTCTCTTGCTGT
CAGCTACCCTCA
dot-bracket secondary structure
........((((((((((((((((((((((((((((.(((((.(((((((.....))))))).))))).......))))))))))))).)))))).))))
))))).......
SIMILARITIES| miRBase zma-MIR156c: 0.0000003 PMRD zma-miR156c: 0.0000003 microPC miR156: 3e-44 | UniProt no hits RFAM mir-156: 0.0004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
