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ABOUT THIS RECORD

ID: MNEST002910
species: Catharanthus roseus
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Catharanthus roseus Catharanthus Vinceae Rauvolfioideae Apocynaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCCAAGGATGACTTGCCGA

miRNA*
 GGCAAGTTGTCTTTGGCTACA

mismatches: 1
bulges: 0
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pre-miRNA
 ATTAATGCATTTCCATGTAGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGACTGTTTTGCCGAGCGCGGAAATAAAATGCAGCTTTCTCTCTCTCTCTC
TCTGTATATTTGCCGCCGTACGTATTTATACGAACTCCTCGGCAAGTTGTCTTTGGCTACATCCTACTTCCTTCATCTCTTTTAATTAG

dot-bracket secondary structure
..............(((.((.((((((.(((.((((((((((((((((((((..((((....))))((((....((.((((((.................
.)))))).))..)))).((.((((....)))).))...)))))))))))))))))))).))).)))))).)).))).............


SIMILARITIES
miRBase ath-MIR169a: 0.00000000001

PMRD ath-miR169a: 0.00000000001

microPC miR169: 2e-37		UniProt no hits

RFAM MIR169_2: 0.0000000007		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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