ABOUT THIS RECORDspecies: Centaurea maculosa
miRNA family: MIRf1059
source: miRNEST
Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTGCTTTGAAGAAGAGAGGG miRNA* AGTTCTTTTGAAGCACTGC mismatches: 4 bulges: 2 |
pre-miRNA
AATAGCTACTCAAGTTCCTATATGGTTAGCCGTTGCTTTGAAGAAGAGAGGGAAGTGCACCATTCGCCCTCCGGATTGGATGTCCGTTGAAAAGTTGACT
CAGGTTCTGGAGGCAGAGCGTGACTCTGCTAGTTCTTTTGAAGCACTGCCATTTCACTATGTTGAGATTTCAAGGCT
dot-bracket secondary structure
....((((.(((.((....)).))).))))...((((((..(((((((..((.((..(((..(((..((((((((...((.(((.(((....))).))))
)....))))))))..))).)))...)).))..)))))))))))))..(((((((((......)))))).....))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AATAGCTACTCAAGTTCCTATATGGTTAGCCGTTGCTTTGAAGAAGAGAGGGAAGTGCACCATTCGCCCTCCGGATTGGATGTCCGTTGAAAAGTTGACT
CAGGTTCTGGAGGCAGAGCGTGACTCTGCTAGTTCTTTTGAAGCACTGCCATTTCACTATGTTGAGATTTCAAGGCT
dot-bracket secondary structure
....((((.(((.((....)).))).))))...((((((..(((((((..((.((..(((..(((..((((((((...((.(((.(((....))).))))
)....))))))))..))).)))...)).))..)))))))))))))..(((((((((......)))))).....))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf11170-akr: 0.00004 microPC no hits | UniProt sp|Q9C7A8|PSF2_ARATH: 5e-20 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
