ABOUT THIS RECORDspecies: Centaurea maculosa
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTATGAGGAGCCAAGCATA mismatches: 2 bulges: 0 |
pre-miRNA
TGTGTAAGTATATGCCTGGCTCCCTGTATGCCATTTTCAGAGCCCATCGGTATTTCCAATGGCCTCCGTGGATGGCGTATGAGGAGCCAAGCATATTCCAC
AT
dot-bracket secondary structure
)(((.....((((((.(((((((.((((((((((((...(((.((((.((.....)).)))).)))...)))))))))))).))))))).))))))..)))
..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTGTAAGTATATGCCTGGCTCCCTGTATGCCATTTTCAGAGCCCATCGGTATTTCCAATGGCCTCCGTGGATGGCGTATGAGGAGCCAAGCATATTCCAC
AT
dot-bracket secondary structure
)(((.....((((((.(((((((.((((((((((((...(((.((((.((.....)).)))).)))...)))))))))))).))))))).))))))..)))
..
SIMILARITIES| miRBase ptc-MIR160c: 2.0E-24 PMRD ptc-miR160c: 2.0E-24 microPC miR160: 1.0E-40 | UniProt no hits RFAM 0mir-160: 1.0E-19 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST046058) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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