ABOUT THIS RECORDspecies: Centaurea maculosa
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCATA miRNA* TGCTCACTTCTCTTGCTGTCAGC mismatches: 0 bulges: 2 |
pre-miRNA
AGAAAGAAAGCTGACAGAAGAGAGTGAGCATATGCAAAGCAATTGTATAAAAAAACTATACATTTGTTGGAATTATGCGTGTGCTCACTTCTCTTGCTGT
CAGCTACTCTCC
dot-bracket secondary structure
.((.((..((((((((((((((((((((((((((((.(((((.((((((.......)))))).))))).......))))))))))))).)))))).))))
))))).)).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAAAGAAAGCTGACAGAAGAGAGTGAGCATATGCAAAGCAATTGTATAAAAAAACTATACATTTGTTGGAATTATGCGTGTGCTCACTTCTCTTGCTGT
CAGCTACTCTCC
dot-bracket secondary structure
.((.((..((((((((((((((((((((((((((((.(((((.((((((.......)))))).))))).......))))))))))))).)))))).))))
))))).)).)).
SIMILARITIES| miRBase zma-MIR156c: 0.0000003 PMRD zma-miR156c: 0.0000003 microPC miR156: 5e-34 | UniProt no hits RFAM mir-156: 0.0004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
