miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002933
species: Centaurea maculosa
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCATA

miRNA*
 TGCTCACTTCTCTTGCTGTCAGC

mismatches: 0
bulges: 2
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pre-miRNA
 AGAAAGAAAGCTGACAGAAGAGAGTGAGCATATGCAAAGCAATTGTATAAAAAAACTATACATTTGTTGGAATTATGCGTGTGCTCACTTCTCTTGCTGT
CAGCTACTCTCC

dot-bracket secondary structure
.((.((..((((((((((((((((((((((((((((.(((((.((((((.......)))))).))))).......))))))))))))).)))))).))))
))))).)).)).


SIMILARITIES
miRBase zma-MIR156c: 0.0000003

PMRD zma-miR156c: 0.0000003

microPC miR156: 5e-34		UniProt no hits

RFAM mir-156: 0.0004		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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