ABOUT THIS RECORDspecies: Centaurea solstitialis
miRNA family: MIR530
source: miRNEST
Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCACCTTT miRNA* GGGTGCAGGACAAGTGCAGG mismatches: 1 bulges: 1 |
pre-miRNA
TTGCCTTTGTCTGCATTTGCACCTGCACCTTTCTACCTTTCTTCTCCATCTTCATCTTCTTCACCACCATCATAAGACAATGTGTGTGTGTGTGTGTGTG
TGTGAGTAGGTGGAGAGGTTAAGAAGAAAAGAAGGGTGCAGGACAAGTGCAGGCTAAGACA
dot-bracket secondary structure
....(((.(((((((((((..(((((((((((((...((((((((((.(((((((((..(((((((((((((((..(((.....))).)))).))).)))
.))))).)))))))))))...))))))))))))))))))))).))))))))))).)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGCCTTTGTCTGCATTTGCACCTGCACCTTTCTACCTTTCTTCTCCATCTTCATCTTCTTCACCACCATCATAAGACAATGTGTGTGTGTGTGTGTGTG
TGTGAGTAGGTGGAGAGGTTAAGAAGAAAAGAAGGGTGCAGGACAAGTGCAGGCTAAGACA
dot-bracket secondary structure
....(((.(((((((((((..(((((((((((((...((((((((((.(((((((((..(((((((((((((((..(((.....))).)))).))).)))
.))))).)))))))))))...))))))))))))))))))))).))))))))))).)))...
SIMILARITIES| miRBase ptc-MIR530a: 0.00000003 PMRD ptc-miRf11025-akr: 0.00000003 microPC miR1030: 5e-35 | UniProt no hits RFAM MIR530: 0.0000006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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