ABOUT THIS RECORDspecies: Centaurea solstitialis
miRNA family: MIR530
source: miRNEST
Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCACCTTT miRNA* GGGTGCAGGACAAGTGCAGG mismatches: 1 bulges: 1 |
pre-miRNA
ATTGCCTTTGTCTGCATTTGCACCTGCACCTTTCTACCTTTCTTCTCCATCTTCATCTTCTTCACCACCATCATAAGACAATGTGTGTGTGTGTGTGTGTG
TGTGAGTAGGTGGAGAGGTTAAGAAGAAAAGAAGGGTGCAGGACAAGTGCAGGCTAAGACA
dot-bracket secondary structure
)....(((.(((((((((((..(((((((((((((...((((((((((.(((((((((..(((((((((((((((..(((.....))).)))).))).)))
.))))).)))))))))))...))))))))))))))))))))).))))))))))).)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTGCCTTTGTCTGCATTTGCACCTGCACCTTTCTACCTTTCTTCTCCATCTTCATCTTCTTCACCACCATCATAAGACAATGTGTGTGTGTGTGTGTGTG
TGTGAGTAGGTGGAGAGGTTAAGAAGAAAAGAAGGGTGCAGGACAAGTGCAGGCTAAGACA
dot-bracket secondary structure
)....(((.(((((((((((..(((((((((((((...((((((((((.(((((((((..(((((((((((((((..(((.....))).)))).))).)))
.))))).)))))))))))...))))))))))))))))))))).))))))))))).)))...
SIMILARITIES| miRBase ptc-MIR530a: 3.0E-8 PMRD ptc-miRf11025-akr: 3.0E-8 microPC miR1030: 5.0E-35 | UniProt no hits RFAM 0MIR530: 6.0E-7 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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