ABOUT THIS RECORDspecies: Centaurea solstitialis
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTACTCCCTCTGTCCCAAAAG miRNA* CTTGGACGGAGGGAGTAATG mismatches: 2 bulges: 1 |
pre-miRNA
CTAGAATTTGTGTACTCCCTCTGTCCCAAAAGAGGTGTCCACTTTCAAACTACGGGATTGAGATACTCCTTACTCCACCTATAATCAAGGGCAAACTGTA
GAAACCCAAAACTGTGATAATTATACATCTCTAGAACTATGCCTTTCTCATCGCGTACATCTCTCTTGGACGGAGGGAGTAATGTATAAGAG
dot-bracket secondary structure
......((((((((((((((((((((.((.((((((((.............(((.(((.((((........................((((((..(((.(
((..........((((.......))))))).))).....))))))))))))).))))))))))).))))))))))))))))...))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
CTAGAATTTGTGTACTCCCTCTGTCCCAAAAGAGGTGTCCACTTTCAAACTACGGGATTGAGATACTCCTTACTCCACCTATAATCAAGGGCAAACTGTA
GAAACCCAAAACTGTGATAATTATACATCTCTAGAACTATGCCTTTCTCATCGCGTACATCTCTCTTGGACGGAGGGAGTAATGTATAAGAG
dot-bracket secondary structure
......((((((((((((((((((((.((.((((((((.............(((.(((.((((........................((((((..(((.(
((..........((((.......))))))).))).....))))))))))))).))))))))))).))))))))))))))))...))))))..
SIMILARITIES| miRBase osa-MIR1862d: 0.0006 PMRD osa-miR1862d: 0.0006 microPC no hits | UniProt no hits RFAM MIR1122: 0.0007 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
