ABOUT THIS RECORDspecies: Artemisia annua
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Artemisia annua Artemisia Artemisiinae Anthemideae Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAATCCTGATGATGCTGCAGC miRNA* TGCTTAATAATTGATGATTCAG mismatches: 5 bulges: 1 |
pre-miRNA
GGGTGAGTCAAATATTGAATCTTTGATGTGGGAATCCTGATGATGCTGCAGCACTCTTAGCATAGATTTGGTGTAGAAGAGGTCCATTGCTATTAACATT
GTTTTCATATGAAGCTACAGACAAATCAGTTACTCCTTCCATTGTGCTGCTTAATAATTGATGATTCAGTGAGTTGAAGTTCGGTGGATCCATCACA
dot-bracket secondary structure
..((((......(((((((.(((((((....(((((.((((.((...(((((((.......((.((...((.((((..((.(((....(((.........
............)))....)))...))..)))).)).)).)).)))))))...)).))))..))))).....))))))))))))))......)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGGTGAGTCAAATATTGAATCTTTGATGTGGGAATCCTGATGATGCTGCAGCACTCTTAGCATAGATTTGGTGTAGAAGAGGTCCATTGCTATTAACATT
GTTTTCATATGAAGCTACAGACAAATCAGTTACTCCTTCCATTGTGCTGCTTAATAATTGATGATTCAGTGAGTTGAAGTTCGGTGGATCCATCACA
dot-bracket secondary structure
..((((......(((((((.(((((((....(((((.((((.((...(((((((.......((.((...((.((((..((.(((....(((.........
............)))....)))...))..)))).)).)).)).)))))))...)).))))..))))).....))))))))))))))......)))).
SIMILARITIES| miRBase vvi-MIR172c: 0.000000003 PMRD vvi-miR172c: 0.000000003 microPC miR172: 0.0006 | UniProt no hits RFAM mir-172: 0.00000005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
