ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATGGGACGGAGGGGGTACAA miRNA* ATGCTCTTTCCGTCCCATGTT mismatches: 3 bulges: 0 |
pre-miRNA
TTACACGGCTAAAAGCCTAATACATGCTCTTTCCGTCCCATGTTAAGTGACTTTCTGTTACATGTATCTTAACGTTTTTAAGGCATAAATACATTCATATT
TGGTCAAATTTGAGTCATGGGACGGAGGGGGTACAACAAAGTGTAAAAGCATTTT
dot-bracket secondary structure
).....((((...)))).......((((((((((((((((((..((.(((((.........(((((((((((.....))))))......))))).......
.)))))..)).....))))))))))))))))))....(((((((....)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTACACGGCTAAAAGCCTAATACATGCTCTTTCCGTCCCATGTTAAGTGACTTTCTGTTACATGTATCTTAACGTTTTTAAGGCATAAATACATTCATATT
TGGTCAAATTTGAGTCATGGGACGGAGGGGGTACAACAAAGTGTAAAAGCATTTT
dot-bracket secondary structure
).....((((...)))).......((((((((((((((((((..((.(((((.........(((((((((((.....))))))......))))).......
.)))))..)).....))))))))))))))))))....(((((((....)))))))
SIMILARITIES| miRBase bdi-MIR1127: 2.0E-6 PMRD bdi-miR1127: 2.0E-6 microPC no hits | UniProt no hits RFAM 2MIR1122: 2.0E-16 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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