miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST003044
species: Brachypodium distachyon
miRNA family: MIRf1205
source: miRNEST

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGAGCATGGATGGAGCGG

miRNA*
 GTTTATCTTGTTCTTCATT

mismatches: 2
bulges: 2
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pre-miRNA
 AGATTATGCTGACTTCATATCTGTTTATCTTGTTCTTCATTCTGCCAATGCCAAGGATGTGGAGGTGGTTTTCACGTTTACTTTACTTGACAAGGCTGGA
GAACTAGTCCCTTCTTACAGCCGAACCATGGCCGGGCATACCTTCGCAAAGAAAGGTTCATCTGGGGGATACCATGATTTTATCAAGAAGGTGGATTTAG
AGGGATCACTTTATTTAAGGGATGATGATAGTTTCAGCTTCAGATGCGATGTCAACGTACTGAAGCATAATCAGCAGAAATGCGACCAGCCTGTTGTAAT
ACCCCCAAGCAACTTGTGTCGGCATCTCAAAGACCTCCTGGAGAGCATGGATGGAGCGGATGTGATCTTTCATGTAGG

dot-bracket secondary structure
......((((((..((((((((((((.((.(((((((((.((((((...((((.((.(((.(((..(((..........)))...))).))).(((((((
(((........))))).)))))...)).))))..))).(((((((.....((.(((.(((..(((......)))))).))).))..)))))))(((((..
..))))).((((....))))..((.((((.((....(((((((.((((.......))))))))))))).)))).))((.(((((((..((..(((((...
........)))))..))))).)))).))..))).....))))))))).))...))))))))))))....))).)))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|O22286|BPM3_ARATH: 0.00000000001

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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