ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCAG miRNA* GGCAGGTTGTTCTTGGCTAACA mismatches: 1 bulges: 1 |
pre-miRNA
CTGTCAATGGCCATACGTGAAACGAGATAGAGAGTGGAATGTAGCCAAGGATGACTTGCCAGGTATGTGCATGTACGCTTCAGGGAATTATATGCATCCC
TGGTCTGAATCCATGCTGATATTTCCCGGCAGGTTGTTCTTGGCTAACATCTTGCTCTCTTTCTCTCACGCGAGGCTGTTGCATGGA
dot-bracket secondary structure
((((((((((((...(((((...((((.(((((((((.((((((((((((((((((((((.((.(((((((((..((..(((((((..........))))
)))..))....)))))..))))..)).)))))))))))))))))).)))).))))))))).)))))))))...)))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGTCAATGGCCATACGTGAAACGAGATAGAGAGTGGAATGTAGCCAAGGATGACTTGCCAGGTATGTGCATGTACGCTTCAGGGAATTATATGCATCCC
TGGTCTGAATCCATGCTGATATTTCCCGGCAGGTTGTTCTTGGCTAACATCTTGCTCTCTTTCTCTCACGCGAGGCTGTTGCATGGA
dot-bracket secondary structure
((((((((((((...(((((...((((.(((((((((.((((((((((((((((((((((.((.(((((((((..((..(((((((..........))))
)))..))....)))))..))))..)).)))))))))))))))))).)))).))))))))).)))))))))...)))))))).)))).
SIMILARITIES| miRBase bdi-MIR169b: 7e-53 PMRD bdi-miR169b: 7e-53 microPC miR169: 0.0001 | UniProt no hits RFAM MIR169_2: 0.00000005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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