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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Cynodon dactylon
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST003065
species:
Brachypodium distachyon
miRNA family:
MIR169
source:
miRNEST
Taxonomy by NCBI:
Brachypodium distachyon
Brachypodium
Brachypodieae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGATGACTTGCCAG
miRNA*
GGCAGGTTGTTCTTGGCTAACA
mismatches:
1
bulges:
1
View larger
pre-miRNA
CTGTCAATGGCCATACGTGAAACGAGATAGAGAGTGGAATG
TAGCCAAGGATGACTTGCCAG
GTATGTGCATGTACGCTTCAGGGAATTATATGCATCCC
TGGTCTGAATCCATGCTGATATTTCCC
GGCAGGTTGTTCTTGGCTAACA
TCTTGCTCTCTTTCTCTCACGCGAGGCTGTTGCATGGA
dot-bracket secondary structure
((((((((((((...(((((...((((.(((((((((.(((
(((((((((((((((((((.(
(.(((((((((..((..(((((((..........))))
)))..))....)))))..))))..)).
)))))))))))))))))).)))
).))))))))).)))))))))...)))))))).)))).
SIMILARITIES
miRBase
bdi-MIR169b
:
7e-53
PMRD
bdi-miR169b
:
7e-53
microPC
miR169
:
0.0001
UniProt
no hits
RFAM
MIR169_2: 0.00000005
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record