ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR393
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGTGCAATCCCTTTGGAAC miRNA* TCCAAAGGGATCGCATTGATC mismatches: 3 bulges: 0 |
pre-miRNA
CTTCAGGAAGCTAGTGGAGGACTCCAAAGGGATCGCATTGATCTCATCAGCTGCATCCAAGCATGAATCAACGGATGGATGGATCGATGCATATGCAAGA
TCAGTGCAATCCCTTTGGAACTCTCGACTCGCCTCTGCCT
dot-bracket secondary structure
.....(((.((.(((.((((..(((((((((((.((((((((((...((..((((((....(((..(((....)))..)))....))))))..))..)))
))))))).)))))))))))..)))).))).)).)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTCAGGAAGCTAGTGGAGGACTCCAAAGGGATCGCATTGATCTCATCAGCTGCATCCAAGCATGAATCAACGGATGGATGGATCGATGCATATGCAAGA
TCAGTGCAATCCCTTTGGAACTCTCGACTCGCCTCTGCCT
dot-bracket secondary structure
.....(((.((.(((.((((..(((((((((((.((((((((((...((..((((((....(((..(((....)))..)))....))))))..))..)))
))))))).)))))))))))..)))).))).)).)))....
SIMILARITIES| miRBase bdi-MIR393b: 3e-73 PMRD zma-miR393: 0.00000000000003 microPC miR393: 0.00003 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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