ABOUT THIS RECORDspecies: Citrus clementina
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Citrus clementina Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GCTCAAGAAAGCTGTGGGAGA mismatches: 1 bulges: 0 |
pre-miRNA
AAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCCACTGTTTGCTGATTAATACACGGCTCTTGCTAGCTAGGCGCCGTATGTAGACACCGCGCG
CCATGGGAGCTCAAGAAAGCTGTGGGAGAACATGGCACACCTT
dot-bracket secondary structure
........((((((.(((((((((((((((((((.((((((..((.(((((.((.(((.(((((.((((.....)))).))))).))).))))..))).)
)..)))))).))))))))))))))))))).)))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCCACTGTTTGCTGATTAATACACGGCTCTTGCTAGCTAGGCGCCGTATGTAGACACCGCGCG
CCATGGGAGCTCAAGAAAGCTGTGGGAGAACATGGCACACCTT
dot-bracket secondary structure
........((((((.(((((((((((((((((((.((((((..((.(((((.((.(((.(((((.((((.....)))).))))).))).))))..))).)
)..)))))).))))))))))))))))))).)))))).......
SIMILARITIES| miRBase ccl-MIR396: 2e-77 PMRD gma-miR396b: 0.000000000000002 microPC miR396: 9e-58 | UniProt no hits RFAM MIR396: 0.000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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