ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf16
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACCTCGTGGTCGAGTGGT miRNA* TACTCCACCTGGGGGTCGAGT mismatches: 5 bulges: 0 |
pre-miRNA
AATGAAAACCCTCCACCTCGTGGTCGAGTGGTGAGGTGAAGTTGTGATGTCTTCTACTCCACCTGGGGGTCGAGTGGTCTCTT
dot-bracket secondary structure
.......((((((.(((((..(((.((((((.((.((.........)).))..)))))).)))..))))).))).))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AATGAAAACCCTCCACCTCGTGGTCGAGTGGTGAGGTGAAGTTGTGATGTCTTCTACTCCACCTGGGGGTCGAGTGGTCTCTT
dot-bracket secondary structure
.......((((((.(((((..(((.((((((.((.((.........)).))..)))))).)))..))))).))).))).....
SIMILARITIES| miRBase no hits PMRD ath-miRf10525-akr: 8e-32 microPC no hits | UniProt no hits RFAM MIR854: 0.00007 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
