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ABOUT THIS RECORD
ID:
MNEST003315
species:
Arabidopsis thaliana
miRNA family:
MIR869
source:
miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTGGTGTTGAGATAGTTGAC
miRNA*
CACCTATCTCAACTCCAGGAT
mismatches:
3
bulges:
0
View larger
pre-miRNA
TCTGGCCATGTATGCCCACCATACAGATTTCCATACGGTAGAAGAAAGTAT
CACCTATCTCAACTCCAGGAT
TGGACCAGTACTAGGCTCATCATAGTTA
AGCCACAATCCACGATTCCTCATCAGCTATAAAAGCAAAACCTTCATATCTATCCTTGTTTCTAAACCAGTCTCATAGATATGAAGGCTTTGTTTCTGAT
GAAGGATTGTGGGATTGTTGCTTAACACTGATGAGCATATTATTGGTTCAAT
TCTGGTGTTGAGATAGTTGAC
ACTTCTTATACCGNATGAAAACATGTG
TGGTGGGCTTAGACAACCATN
dot-bracket secondary structure
..(((...(((..((((((((((((..(((.(((.(((((.(((((.((.(
((.((((((((((.(((((((
((((((((((.((.((((((((..((((
(((.((((((((((((((.(((((((......(((((((.(((((((((((((.((.(((....))).))....))))))))))))).))))))))))))
)).))))))).))))))).)))))))..)))))))).)).))))))))))))
))))).)))))))))).))).
))))))).))))).))).)))..))))
))))))))....))).)))..
SIMILARITIES
miRBase
ath-MIR869
:
5e-166
PMRD
no hits
microPC
no hits
UniProt
sp|O22781|SUVH2_ARATH: 0.000000002
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets
Source sequences
download this record
deep sequencing data evidence