miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST003315
species: Arabidopsis thaliana
miRNA family: MIR869
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTGGTGTTGAGATAGTTGAC

miRNA*
 CACCTATCTCAACTCCAGGAT

mismatches: 3
bulges: 0
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pre-miRNA
 TCTGGCCATGTATGCCCACCATACAGATTTCCATACGGTAGAAGAAAGTATCACCTATCTCAACTCCAGGATTGGACCAGTACTAGGCTCATCATAGTTA
AGCCACAATCCACGATTCCTCATCAGCTATAAAAGCAAAACCTTCATATCTATCCTTGTTTCTAAACCAGTCTCATAGATATGAAGGCTTTGTTTCTGAT
GAAGGATTGTGGGATTGTTGCTTAACACTGATGAGCATATTATTGGTTCAATTCTGGTGTTGAGATAGTTGACACTTCTTATACCGNATGAAAACATGTG
TGGTGGGCTTAGACAACCATN

dot-bracket secondary structure
..(((...(((..((((((((((((..(((.(((.(((((.(((((.((.(((.((((((((((.(((((((((((((((((.((.((((((((..((((
(((.((((((((((((((.(((((((......(((((((.(((((((((((((.((.(((....))).))....))))))))))))).))))))))))))
)).))))))).))))))).)))))))..)))))))).)).))))))))))))))))).)))))))))).))).))))))).))))).))).)))..))))
))))))))....))).)))..


SIMILARITIES
miRBase ath-MIR869: 5e-166

PMRD no hits

microPC no hits		UniProt sp|O22781|SUVH2_ARATH: 0.000000002

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets
Source sequences
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deep sequencing data evidence




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