ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* TATTGGCCTGGTTCACTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
TAAGCATGAGAGAGTCCCTTTGATATTGGCCTGGTTCACTCAGATCTTACCTGACCACACACGTAGATATACATTATTCTCTCTAGATTATCTGATTGAG
CCGCGCCAATATCTCAGTACTCTCTCGTCTCTA
dot-bracket secondary structure
..((.((((((((((..((..(((((((((.(((((((.((((((((.....((........(((....))).......))...)))...))))).))))
))).)))))))))..)).))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TAAGCATGAGAGAGTCCCTTTGATATTGGCCTGGTTCACTCAGATCTTACCTGACCACACACGTAGATATACATTATTCTCTCTAGATTATCTGATTGAG
CCGCGCCAATATCTCAGTACTCTCTCGTCTCTA
dot-bracket secondary structure
..((.((((((((((..((..(((((((((.(((((((.((((((((.....((........(((....))).......))...)))...))))).))))
))).)))))))))..)).))))))))))))...
SIMILARITIES| miRBase ath-MIR171a: 1e-65 PMRD ath-miR171a: 1e-65 microPC miR171: 0.000006 | UniProt no hits RFAM MIR171_1: 6e-59 | most similar mature miRNAs |
Identical with: ath-MIR171a from miRBase (MNEST040060) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
