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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST003323
species: Arabidopsis thaliana
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGCGCCAATATC

miRNA*
 TATTGGCCTGGTTCACTCAGA

mismatches: 2
bulges: 0
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pre-miRNA
 TAAGCATGAGAGAGTCCCTTTGATATTGGCCTGGTTCACTCAGATCTTACCTGACCACACACGTAGATATACATTATTCTCTCTAGATTATCTGATTGAG
CCGCGCCAATATCTCAGTACTCTCTCGTCTCTA

dot-bracket secondary structure
..((.((((((((((..((..(((((((((.(((((((.((((((((.....((........(((....))).......))...)))...))))).))))
))).)))))))))..)).))))))))))))...


SIMILARITIES
miRBase ath-MIR171a: 1e-65

PMRD ath-miR171a: 1e-65

microPC miR171: 0.000006		UniProt no hits

RFAM MIR171_1: 6e-59		most similar mature miRNAs

Identical with: ath-MIR171a from miRBase (MNEST040060)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence




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