ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTTCGCAGTTTCACC mismatches: 1 bulges: 0 |
pre-miRNA
CCGGCATCTGATGAAGCTGCCAGCATGATCTAATTAGCTTTCTTTATCCTTTGTTGTGTTTCATGACGATGGTTAAGAGATCAGTCTCGATTAGATCATG
TTCGCAGTTTCACCCGTTGACT
dot-bracket secondary structure
.(((...))).(((((((((.((((((((((((((.(((.(((((..((.((((((((...)))))))).))...)))))..)))...))))))))))))
)).)))))))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
CCGGCATCTGATGAAGCTGCCAGCATGATCTAATTAGCTTTCTTTATCCTTTGTTGTGTTTCATGACGATGGTTAAGAGATCAGTCTCGATTAGATCATG
TTCGCAGTTTCACCCGTTGACT
dot-bracket secondary structure
.(((...))).(((((((((.((((((((((((((.(((.(((((..((.((((((((...)))))))).))...)))))..)))...))))))))))))
)).)))))))))..........
SIMILARITIES| miRBase ath-MIR167a: 5e-65 PMRD ath-miR167a: 5e-65 microPC miR167: 2e-52 | UniProt no hits RFAM MIR167_1: 9e-64 | most similar mature miRNAs |
Identical with: ath-MIR167a from miRBase (MNEST040039) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
