ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGC miRNA* ATTGTCATTGGGAGGTTGTG mismatches: 5 bulges: 1 |
pre-miRNA
TGCATTGTCATTGGGAGGTTGTGGCGGAAATGTGAGAATCCTGATGATGCTGC
dot-bracket secondary structure
.(((.(((((((((((..((...(((....)))..)).))))))))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
TGCATTGTCATTGGGAGGTTGTGGCGGAAATGTGAGAATCCTGATGATGCTGC
dot-bracket secondary structure
.(((.(((((((((((..((...(((....)))..)).))))))))))).)))
SIMILARITIES| miRBase sbi-MIR172f: 0.000009 PMRD psi-miR172: 0.000009 microPC miR172: 0.0001 | UniProt no hits RFAM mir-172: 0.0001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
