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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST003346
species: Arabidopsis thaliana
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCCTGATGATGCTGC

miRNA*
 ATTGTCATTGGGAGGTTGTG

mismatches: 5
bulges: 1
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pre-miRNA
 TGCATTGTCATTGGGAGGTTGTGGCGGAAATGTGAGAATCCTGATGATGCTGC

dot-bracket secondary structure
.(((.(((((((((((..((...(((....)))..)).))))))))))).)))


SIMILARITIES
miRBase sbi-MIR172f: 0.000009

PMRD psi-miR172: 0.000009

microPC miR172: 0.0001		UniProt no hits

RFAM mir-172: 0.0001		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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