ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf17
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCAGCCAGGGGGTCGAGTG miRNA* CTCGACCTCGGGGTCTAGTGG mismatches: 4 bulges: 0 |
pre-miRNA
TGAAATTGTGAAGTCCCCTACTCAGCCAGGGGGTCGAGTGGTCTGTTGAGGTCTTGAAGCTTCTACTCGACCTCGGGGTCTAGTGGTTTGACATGATCAG
GT
dot-bracket secondary structure
............(((..(((((..(((..((((((((((((...(((..........)))..))))))))))))..)))..)))))...)))........
..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
TGAAATTGTGAAGTCCCCTACTCAGCCAGGGGGTCGAGTGGTCTGTTGAGGTCTTGAAGCTTCTACTCGACCTCGGGGTCTAGTGGTTTGACATGATCAG
GT
dot-bracket secondary structure
............(((..(((((..(((..((((((((((((...(((..........)))..))))))))))))..)))..)))))...)))........
..
SIMILARITIES| miRBase no hits PMRD ath-miRf10778-akr: 5e-40 microPC no hits | UniProt no hits RFAM MIR854: 0.000006 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
