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Species belonging to selected taxon:
Arabidopsis thaliana
ABOUT THIS RECORD
ID:
MNEST003367
species:
Arabidopsis thaliana
miRNA family:
MIRf17
source:
miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACTCAGCCAGGGGGTCGAGTG
miRNA*
CTCGACCTCGGGGTCTAGTGG
mismatches:
4
bulges:
0
View larger
pre-miRNA
TGAAATTGTGAAGTCCCCT
ACTCAGCCAGGGGGTCGAGTG
GTCTGTTGAGGTCTTGAAGCTTCTA
CTCGACCTCGGGGTCTAGTGG
TTTGACATGATCAG
GT
dot-bracket secondary structure
............(((..((
(((..(((..(((((((((((
(...(((..........)))..)))
)))))))))..)))..)))))
...)))........
..
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf10778-akr
:
5e-40
microPC
no hits
UniProt
no hits
RFAM
MIR854: 0.000006
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
degradome data
download this record