ABOUT THIS RECORDspecies: Glycine max
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
AATTTTAATTTTGGAGGTGTATCGAGATGAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAATTTGGTTGTGGAAGAACACAAAGCAAG
AATCGGTCGATAAACCTCTGCATCCAGCGCTCACTTTGCCTCTCTTTACCAGCAATTTCCTTTCTC
dot-bracket secondary structure
............((((.(((...((((.((((((((((..(((((.((((.((((.(((((((..(((.((.......(((((......)))))..)).)
))..))))))).)))).)))).))))).....)))))))))))))).....)))..))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATTTTAATTTTGGAGGTGTATCGAGATGAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAATTTGGTTGTGGAAGAACACAAAGCAAG
AATCGGTCGATAAACCTCTGCATCCAGCGCTCACTTTGCCTCTCTTTACCAGCAATTTCCTTTCTC
dot-bracket secondary structure
............((((.(((...((((.((((((((((..(((((.((((.((((.(((((((..(((.((.......(((((......)))))..)).)
))..))))))).)))).)))).))))).....)))))))))))))).....)))..))))......
SIMILARITIES| miRBase vvi-MIR162: 7e-25 PMRD vvi-miR162: 7e-25 microPC miR162: 1e-41 | UniProt no hits RFAM MIR162_2: 3e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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