ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCCG miRNA* GGGGCGAACTGAGAACACATA mismatches: 1 bulges: 0 |
pre-miRNA
GCGATGCAAGGCAGTTCCGGCGGGGGCGAACTGAGAACACATAAGACGAGATTGCTCGCCTCGCGGTACGGTTCGTGCTGGCCTGGACCACCGTCGTCGC
CGTTCATCTTGTATGCATAATGCTGCATGTGTTCTCAGGTCGCCCCCGCAAGGCCTTCCTTGCTACT
dot-bracket secondary structure
.....((((((.((..((.((((((((((.(((((((((((....(((((((.((..((..((((((..((((((........)))))))))).))..))
.))..))))))).((((......))))))))))))))).))))))))))..)).)).))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCGATGCAAGGCAGTTCCGGCGGGGGCGAACTGAGAACACATAAGACGAGATTGCTCGCCTCGCGGTACGGTTCGTGCTGGCCTGGACCACCGTCGTCGC
CGTTCATCTTGTATGCATAATGCTGCATGTGTTCTCAGGTCGCCCCCGCAAGGCCTTCCTTGCTACT
dot-bracket secondary structure
.....((((((.((..((.((((((((((.(((((((((((....(((((((.((..((..((((((..((((((........)))))))))).))..))
.))..))))))).((((......))))))))))))))).))))))))))..)).)).))))))....
SIMILARITIES| miRBase zma-MIR398a: 5e-44 PMRD zma-miR398b: 5e-44 microPC miR398: 0.000008 | UniProt no hits RFAM MIR398: 0.0000006 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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