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Species belonging to selected taxon:
Agrostis stolonifera
,
Allium cepa
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Dioscorea alata
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST003638
species:
Zea mays
miRNA family:
MIR398
source:
miRNEST
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCGCCCCCG
miRNA*
GGGGCGAACTGAGAACACATA
mismatches:
1
bulges:
0
View larger
pre-miRNA
GCGATGCAAGGCAGTTCCGGCG
GGGGCGAACTGAGAACACATA
AGACGAGATTGCTCGCCTCGCGGTACGGTTCGTGCTGGCCTGGACCACCGTCGTCGC
CGTTCATCTTGTATGCATAATGCTGCA
TGTGTTCTCAGGTCGCCCCCG
CAAGGCCTTCCTTGCTACT
dot-bracket secondary structure
.....((((((.((..((.(((
(((((((.(((((((((((..
..(((((((.((..((..((((((..((((((........)))))))))).))..))
.))..))))))).((((......))))
))))))))))).)))))))))
)..)).)).))))))....
SIMILARITIES
miRBase
zma-MIR398a
:
5e-44
PMRD
zma-miR398b
:
5e-44
microPC
miR398
:
0.000008
UniProt
no hits
RFAM
MIR398: 0.0000006
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record