ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR171_1
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGCGTCAATATCTCC miRNA* AGGTATTGGCGCGCCTCAATC mismatches: 1 bulges: 0 |
pre-miRNA
CGGCATGCTTCGGCTAGCTCGTTGGTGCTAGGACAAGGGCGGAGGTATTGGCGCGCCTCAATCCGAAGGCGTGGCTGATAGATTGGCGCGGCAGCCATGT
TCTTGGATTGAGCCGCGTCAATATCTCCCCTTGCCTGTCCCGTACCTAGCTAGCTTGCTTGCCTCAC
dot-bracket secondary structure
.((((.((...((((((((....(((((..(((((((((.(((((((((((((((.((((((((((.((((((((((..............)))))))))
).)))))))))).)))))))))))))))))))...))))).))))).)))))))).)).))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGGCATGCTTCGGCTAGCTCGTTGGTGCTAGGACAAGGGCGGAGGTATTGGCGCGCCTCAATCCGAAGGCGTGGCTGATAGATTGGCGCGGCAGCCATGT
TCTTGGATTGAGCCGCGTCAATATCTCCCCTTGCCTGTCCCGTACCTAGCTAGCTTGCTTGCCTCAC
dot-bracket secondary structure
.((((.((...((((((((....(((((..(((((((((.(((((((((((((((.((((((((((.((((((((((..............)))))))))
).)))))))))).)))))))))))))))))))...))))).))))).)))))))).)).))))....
SIMILARITIES| miRBase zma-MIR171m: 5e-41 PMRD sbi-miR171h: 4e-29 microPC miR171: 0.000000002 | UniProt no hits RFAM MIR171_1: 7e-53 | most similar mature miRNAs |
Identical with: zma-MIR171m from miRBase (MNEST042773) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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