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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST003652
species: Zea mays
miRNA family: MIR171_1
source: miRNEST

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGCGTCAATATCTCC

miRNA*
 AGGTATTGGCGCGCCTCAATC

mismatches: 1
bulges: 0
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pre-miRNA
 CGGCATGCTTCGGCTAGCTCGTTGGTGCTAGGACAAGGGCGGAGGTATTGGCGCGCCTCAATCCGAAGGCGTGGCTGATAGATTGGCGCGGCAGCCATGT
TCTTGGATTGAGCCGCGTCAATATCTCCCCTTGCCTGTCCCGTACCTAGCTAGCTTGCTTGCCTCAC

dot-bracket secondary structure
.((((.((...((((((((....(((((..(((((((((.(((((((((((((((.((((((((((.((((((((((..............)))))))))
).)))))))))).)))))))))))))))))))...))))).))))).)))))))).)).))))....


SIMILARITIES
miRBase zma-MIR171m: 5e-41

PMRD sbi-miR171h: 4e-29

microPC miR171: 0.000000002		UniProt no hits

RFAM MIR171_1: 7e-53		most similar mature miRNAs

Identical with: zma-MIR171m from miRBase (MNEST042773)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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