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ABOUT THIS RECORD
ID:
MNEST003684
species:
Zea mays
miRNA family:
MIR2673
source:
miRNEST
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCTCTTCCTCTTCCTCTTCCT
miRNA*
GACGAGGAGCAGGAAGAGCTC
mismatches:
4
bulges:
0
View larger
pre-miRNA
CTAGGCAGGCTAGCTTCGCATGGATTCACCCGCGGCTGCGTCGTCGCTGCTCCTGGACCACTCGTGCCGCC
GCTCTTCCTCTTCCTCTTCCT
CCGCCGCC
TGATGGTGATGGCCAGCGCCGGCGTCAACGTGCCCGGCGGCGACGAGGTACGGAACCCGACCGCTGCGTCCGCGTCCACCCCAGAATGCCGGATGCGCAG
GCGCCACCGCCTCGAGCCCCAAGGATCCGGCGACGCCGCCGCCGCTGCGGCGCCGGGCCCGAGCTGGGTGCGCCGTCTCCGTCCTGCGGCCTCCCGGTTC
TCGCCGTCGCCGTCGCCATCGCTGTCGCCGTCGTCGTCCCAGAGCTCTGCGGACAGGCCCAAC
GACGAGGAGCAGGAAGAGCTC
GACCATGAGGTGGAGG
TGGAGCTCGCGCCGGCGGGGCCGCAGCTCGAGCCCGGCGAGGCTGAAGGTGA
dot-bracket secondary structure
....((....(((((((((.(((.(((....((((((.(((((.(((.(((((....(((((((((.((..
(((((((((.((((((.((..
..(((...
(((((((((((((..(((.(((((...(((.((..((.(((..((((((..((....((.((..(((((((((((..........))).))))))))..)
)))...)))))))).)))))..((.(((((((.(((.((....)).))).))))))).))((((((((...(((((.........)))))..))))))))
..)))))))))).)))....)))))))))))))..(((((((....))).)))).))).....
)).)))))).))))))))).)
)..))))).))))...
.)))))..))).))))).)))))).....))).))))))))))))...))..
SIMILARITIES
miRBase
mtr-MIR2673b
:
0.00009
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
SSU_rRNA_eukarya: 0.000002
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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